//
// Manta - Structural Variant and Indel Caller
// Copyright (c) 2013-2019 Illumina, Inc.
//
// This program is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// at your option) any later version.
//
// This program is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License
// along with this program.  If not, see <http://www.gnu.org/licenses/>.
//
//

/// \file
/// \author Chris Saunders
///

#pragma once

#include "SVScorePairProcessor.hpp"

struct SVScorePairRefProcessor : public SVScorePairProcessor {
  SVScorePairRefProcessor(
      const std::vector<bool>& initIsAlignmentTumor,
      const SVLocusScanner&    initReadScanner,
      const PairOptions&       initPairOpt,
      const SVCandidate&       initSv,
      const bool               initIsBp1,
      SVEvidence&              initEvidence)
    : SVScorePairProcessor(
          initIsAlignmentTumor, initReadScanner, initPairOpt, initSv, initIsBp1, initEvidence)
  {
  }

  void processClearedRecord(
      const SVId& svId, const bam_record& bamRead, SVEvidenceWriterSampleData& svSupportFrags) override;
};
